miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|161923775|gb|DB905368.1|DB905368 CTGCTTAATCCGTGCGCAACAAGCATTAAAATGATTAACCATACTAGAAGTAGTGCATTTACATGAAAGCATCATCGATC
TTAGTAGCAGCTAAATGAGGAAGAACATAGATAGATTATAAGTCTTGATCTTAAATCAGAGTGTTCTAATTAAAGACATT
CAGGTCCAAACTAGAGAGCACACACAGATAGCGAAGACCGCATATAGCATCATGAGCAATCAGCCTTAGATTTGAGCAGA
GTGACTGCTAATGATGTTATATCATTTTATGAAGCTCCTCGTGTGCTTAAACCTCCCACCAGAAGATTGTTCCGCCTATC
GGAACCCCCCTCCAAGAGCGGGAGCCCAGTAGTCTGCTCCATTGTCGCTGCCAACTTGCAGTGTGCATGACACTGGAACA
AGACACAATCCTCTACTCCTCAGGTCCTTTGGCTCCCCGTGAGAGTCCTGCTGGATAGCTCCTTTCCTCTTTATGCAACT
ATCAAGCAACAGCTGACCGGGGTCCTCGGGAAGCGCACAGTTGCTTTCTCCTTGAAAAAAAAACAGCTCCCTAAGGGCTA
AAGGATCCTTGCCCAAGTACGGTAAGCTG




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  107 bits (266), Expect = 7e-23
 Identities = 56/93 (60%), Positives = 65/93 (69%), Gaps = 7/93 (7%)
 Frame = -2

Query: 588 SLPYLGKDPLA-LRELFFFQGESNCALPEDPGQLLLDSCIKRKGAIQ-----QDSHGEPK 427
           S PY G      +R     QG+ +C  PEDPGQL+ D C+KR+GA       Q++  EPK
Sbjct: 310 SHPYFGTTASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPK 369

Query: 426 -DLRSRGLCLVPVSCTLQVGSDNGADYWAPALG 331
            DLRSRGLCLVP+SCTLQVGSDNGADYWAPALG
Sbjct: 370 KDLRSRGLCLVPISCTLQVGSDNGADYWAPALG 402